From: A novel age-informed approach for genetic association analysis in Alzheimer’s disease
Gene(s) | RS id | Consequence | SNP (hg19) | Discovery | Replication | |||
---|---|---|---|---|---|---|---|---|
N | MAF | N | MAF | Rsq | ||||
KIF21B | rs2297911 | synonymous | 1:200959302:G:A | 11,006 | 0.17391 | 21,631 | 0.1769 | 1 |
USH2A | rs111033333 | missense | 1:216270469:G:A | 11,126 | 0.00085 | 19,544 | 0.00132 | 0.81 |
RAB10 | rs149622307 | synonymous | 2:26332640:T:C | 11,057 | 0.00045 | 9833 | 0.00076 | 0.85 |
TREM2 | rs75932628 | missense | 6:41129252:C:T | 11,076 | 0.00591 | 21,176 | 0.00606 | 0.93 |
PILRA | rs2405442 | synonymous | 7:99971313:T:C | 11,022 | 0.29836 | 21,631 | 0.30567 | 0.94 |
MS4A6A | rs12453 | synonymous | 11:59945745:T:C | 11,114 | 0.3941 | 21,481 | 0.39015 | 0.99 |
RIN3 | rs150221413 | missense | 14:93022240:G:T | 11,020 | 0.00082 | 17,652 | 0.00131 | 0.8 |
TAOK2 | rs4077410 | synonymous | 16:29998200:A:G | 11,063 | 0.47966 | 21,631 | 0.48195 | 0.94 |
NSF/MAPT/ KANSL1 | rs199533 | synonymous | 17:44828931:G:A | 11,094 | 0.20367 | 21,631 | 0.19931 | 0.99 |
ABCA7 | rs547447016 | frameshift | 19:1047507:AGGAGCAG:A | 11,006 | 0.00313 | 18,356 | 0.00311 | 0.88 |